Status
[October 2016] The Aspergillus clavatonanicus CBS 474.65 genome was sequenced with Illumina, assembled with AllPathsLG, and annotated with the JGI Annotation pipeline.
Summary statistics for the Aspergillus clavatonanicus v1.0
release are below.
| Genome Assembly | |
| Genome Assembly size (Mbp) | 26.78 |
| Sequencing read coverage depth | 71.3x |
| # of contigs | 323 |
| # of scaffolds | 309 |
| # of scaffolds >= 2Kbp | 243 |
| Scaffold N50 | 39 |
| Scaffold L50 (Mbp) | 0.23 |
| # of gaps | 14 |
| % of scaffold length in gaps | 0.0% |
| Three largest Scaffolds (Mbp) | 0.56, 0.52, 0.48 |
| ESTs | Data set | # sequences total | # mapped to genome | % mapped to genome |
| EstClusters | ESTclusters | 34569 | 28261 | 81.8% |
| Ests | est.fasta | 48336710 | 45730037 | 94.6% |
| Gene Models | FilteredModels1 | |
| length (bp) of: | average | median |
| gene | 1941 | 1676 |
| transcript | 1755 | 1506 |
| exon | 542 | 320 |
| intron | 85 | 66 |
| description: | ||
| protein length (aa) | 485 | 401 |
| exons per gene | 3.24 | 3 |
| # of gene models | 9490 |
Collaborators
Links
Funding
The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.
