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Info • Aspergillus costiformis CBS 101749 v1.0

Status

[November 2019] The Aspergillus costiformis CBS 101749 v1.0 genome was sequenced with Illumina, assembled with SPAdes, and annotated with the JGI Annotation Pipeline. Mitochondrial genome was assembled separately and is available in the downloads section.

Summary statistics for the Aspergillus costiformis CBS 101749 v1.0 release are below.
Genome Assembly
Genome Assembly size (Mbp) 26.51
Sequencing read coverage depth 159.820535169082x
# of contigs 847
# of scaffolds 835
# of scaffolds >= 2Kbp 732
Scaffold N50 128
Scaffold L50 (Mbp) 0.06
# of gaps 12
% of scaffold length in gaps 0.0%
Three largest Scaffolds (Mbp) 0.30, 0.24, 0.24


ESTs Data set # sequences total # mapped to genome % mapped to genome
EstClusters ESTclusters 33392 30038 90.0%
Ests est.fasta 34437415 33905479 98.5%


Gene Models FilteredModels1
length (bp) of: average median
gene 1851 1585
transcript 1680 1421
exon 528 313
intron 81 59
description:
protein length (aa) 459 373
exons per gene 3.18 3
# of gene models 9807


Funding

The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.