Due to a planned NERSC power outage, JGI portals will be unavailable 6:00am PDT July 10 - 11:59pm PDT July 14. System Status updates available here.
Info • Aspergillus cretensis CBS 112802 v1.0

Status

[March 2019] The Aspergillus cretensis CBS 112802 genome was sequenced with Illumina, assembled with SPAdes, and annotated with the JGI Annotation Pipeline. Mitochondrial genome was assembled separately and is available in the downloads section.

Summary statistics for the Aspergillus cretensis CBS 112802 v1.0 release are below.
Genome Assembly
Genome Assembly size (Mbp) 36.18
Sequencing read coverage depth 61.8810583524x
# of contigs 594
# of scaffolds 586
# of scaffolds >= 2Kbp 524
Scaffold N50 82
Scaffold L50 (Mbp) 0.14
# of gaps 8
% of scaffold length in gaps 0.0%
Three largest Scaffolds (Mbp) 0.41, 0.38, 0.38


ESTs Data set # sequences total # mapped to genome % mapped to genome
EstClusters ESTclusters 37569 35531 94.6%
Ests est.fasta 51281793 51098614 99.6%


Gene Models FilteredModels1
length (bp) of: average median
gene 1941 1676
transcript 1737 1482
exon 519 304
intron 89 65
description:
protein length (aa) 484 402
exons per gene 3.34 3
# of gene models 11751


Funding

The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.