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Info • Penicillium sp. DTU1 v1.0

Status

[July 2020] The Penicillium sp. DTU1 v1.0 genome was sequenced with Illumina, assembled with AllPathsLG, and annotated with the JGI Annotation Pipeline. Mitochondrial genome was assembled separately and is available in the downloads section.

Summary statistics for the Penicillium sp. DTU1 v1.0 release are below.
Genome Assembly
Genome Assembly size (Mbp) 34.88
Sequencing read coverage depth 79.3x
# of contigs 1219
# of scaffolds 1153
# of scaffolds >= 2Kbp 952
Scaffold N50 128
Scaffold L50 (Mbp) 0.08
# of gaps 66
% of scaffold length in gaps 0.1%
Three largest Scaffolds (Mbp) 0.35, 0.34, 0.34


ESTs Data set # sequences total # mapped to genome % mapped to genome
EstClusters ESTclusters 62817 57088 90.9%
Ests est.fasta 133968031 130338870 97.3%


Gene Models FilteredModels1
length (bp) of: average median
gene 1911 1676
transcript 1739 1516
exon 549 329
intron 82 61
description:
protein length (aa) 467 392
exons per gene 3.17 3
# of gene models 11734


Funding

The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.