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Info • Aspergillus cumulatus DTO 311-F5 v1.0

Status

[November 2019] The Aspergillus cumulatus DTO 311-F5 v1.0 genome was sequenced with Illumina, assembled with AllPathsLG, and annotated with the JGI Annotation Pipeline. Mitochondrial genome was assembled separately and is available in the downloads section.

Summary statistics for the Aspergillus cumulatus v1.0 release are below.
Genome Assembly
Genome Assembly size (Mbp) 25.39
Sequencing read coverage depth 103.7x
# of contigs 702
# of scaffolds 664
# of scaffolds >= 2Kbp 601
Scaffold N50 96
Scaffold L50 (Mbp) 0.08
# of gaps 38
% of scaffold length in gaps 0.1%
Three largest Scaffolds (Mbp) 0.30, 0.28, 0.26


ESTs Data set # sequences total # mapped to genome % mapped to genome
EstClusters ESTclusters 47123 43940 93.2%
Ests est.fasta 130644788 129126835 98.8%


Gene Models FilteredModels1
length (bp) of: average median
gene 1907 1658
transcript 1746 1518
exon 552 328
intron 77 59
description:
protein length (aa) 471 389
exons per gene 3.16 3
# of gene models 9595


Funding

The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.