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Info • Aspergillus deflectus CBS 109.55 v1.0

Status

[April 2021] The Aspergillus deflectus CBS 109.55 v1.0 genome was sequenced with Illumina, assembled with SPAdes, and annotated with the JGI Annotation Pipeline. Mitochondrial genome was assembled separately and is available in the downloads section.

Genome Assembly
Genome Assembly size (Mbp) 27.30
Sequencing read coverage depth 179.47
# of contigs 71
# of scaffolds 63
# of scaffolds >= 2Kbp 53
Scaffold N50 7
Scaffold L50 (Mbp) 1.17
# of gaps 8
% of scaffold length in gaps 0.0%
Three largest Scaffolds (Mbp) 3.14, 2.21, 2.11


ESTs Data set # sequences total # mapped to genome % mapped to genome
EstClusters ESTclusters 53763 15038 28.0%
Ests est.fasta 64208228 37912357 59.0%
Please note: RNASeq libraries had high percentages of rRNA. Unmapped contigs BLAST to genus Aspergillus (target organism) and some bacterial genera.


Gene Models FilteredModels1
length (bp) of: average median
gene 1881 1591
transcript 1692 1440
exon 505 288
intron 82 60
description:
protein length (aa) 516 433
exons per gene 3.35 3
# of gene models 9580


Funding

The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.