Info • Aspergillus desertorum CBS 653.73 v1.0

Status

[May 2016] The Aspergillus desertorum CBS 653.73 genome was sequenced with Illumina, assembled with AllPathsLG, and annotated with the JGI Annotation pipeline. Mitochondrial genome was assembled separately and is available in the downloads section.

Summary statistics for the Aspergillus desertorum v1.0 release are below.
Genome Assembly
Genome Assembly size (Mbp) 29.04
Sequencing read coverage depth 95.4x
# of contigs 335
# of scaffolds 288
# of scaffolds >= 2Kbp 259
Scaffold N50 31
Scaffold L50 (Mbp) 0.28
# of gaps 47
% of scaffold length in gaps 0.1%
Three largest Scaffolds (Mbp) 1.15, 0.78, 0.71


ESTs Data set # sequences total # mapped to genome % mapped to genome
EstClusters ESTclusters 28710 27509 95.8%
Ests est.fasta 31971390 13830906 43.3%


Gene Models FilteredModels1
length (bp) of: average median
gene 1853 1593
transcript 1681 1437
exon 525 312
intron 80 60
description:
protein length (aa) 470 392
exons per gene 3.20 3
# of gene models 10111


Funding

The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.