We will have a brief downtime on Tuesday May 28 between 8:45 and 9:30 am PDT due to network equipment maintenance.
Info • Aspergillus dimorphicus CBS 649.79 v1.0

Status

[April 2021] The Aspergillus dimorphicus CBS 649.79 v1.0 genome was sequenced with Illumina, assembled with SPAdes, and annotated with the JGI Annotation Pipeline. Mitochondrial genome was assembled separately and is available in the downloads section.

Genome Assembly
Genome Assembly size (Mbp) 32.40
Sequencing read coverage depth 95.72x
# of contigs 157
# of scaffolds 141
# of scaffolds >= 2Kbp 108
Scaffold N50 6
Scaffold L50 (Mbp) 1.84
# of gaps 16
% of scaffold length in gaps 0.0%
Three largest Scaffolds (Mbp) 4.51, 3.25, 3.00


ESTs Data set # sequences total # mapped to genome % mapped to genome
EstClusters ESTclusters 45118 43922 97.3%
Ests est.fasta 174204697 173214833 99.4%


Gene Models FilteredModels1
length (bp) of: average median
gene 1917 1662
transcript 1755 1521
exon 545 328
intron 75 58
description:
protein length (aa) 483 404
exons per gene 3.22 3
# of gene models 12265


Funding

The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.