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Info • Aspergillus fijiensis CBS 313.89 v1.0

Status

Assembly v1 (Dec 2014) is a minimal draft assembly of Illumina gDNA reads using AllPathsLG and Velvet.

Summary statistics for the Aspergillus fijiensis CBS 313.89 v1.0 release are below.
Genome Assembly
Genome Assembly size (Mbp) 36.51
Sequencing read coverage depth 93.2x
# of contigs 185
# of scaffolds 149
# of scaffolds >= 2Kbp 147
Scaffold N50 28
Scaffold L50 (Mbp) 0.41
# of gaps 36
% of scaffold length in gaps 0.0%
Three largest Scaffolds (Mbp) 0.99, 0.88, 0.85


ESTs Data set # sequences total # mapped to genome % mapped to genome
Other JGI_RNA_contigs 27170 26960 99.2%


Gene Models FilteredModels1
length (bp) of: average median
gene 1844 1608
transcript 1657 1435
exon 523 314
intron 88 66
description:
protein length (aa) 475 399
exons per gene 3.17 3
# of gene models 12019


Genome Reference(s)

Funding

The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.