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Info • Aspergillus filifera CBS 114510 v1.0

Status

[May 2016] The Aspergillus filifera CBS 114510 genome was sequenced with Illumina, assembled with AllPathsLG, and annotated with the JGI Annotation pipeline. Mitochondrial genome was assembled separately and is available in the downloads section.

Summary statistics for the Aspergillus filifera v1.0 release are below.
Genome Assembly
Genome Assembly size (Mbp) 31.48
Sequencing read coverage depth 69.3x
# of contigs 844
# of scaffolds 814
# of scaffolds >= 2Kbp 736
Scaffold N50 126
Scaffold L50 (Mbp) 0.08
# of gaps 30
% of scaffold length in gaps 0.1%
Three largest Scaffolds (Mbp) 0.31, 0.28, 0.28


ESTs Data set # sequences total # mapped to genome % mapped to genome
EstClusters ESTclusters 30250 29097 96.2%
Ests est.fasta 33664112 32340275 96.1%


Gene Models FilteredModels1
length (bp) of: average median
gene 1860 1607
transcript 1686 1448
exon 532 319
intron 82 60
description:
protein length (aa) 475 395
exons per gene 3.17 3
# of gene models 11686


Funding

The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.