Join us for PhycoCosm and MycoCosm webinars on March 9 and 11, 2021!
Info • Aspergillus floccosus CBS 116.37 v1.0

Status

[April 2017] The Aspergillus floccosus CBS 116.37 genome was sequenced with Illumina, assembled with AllPathsLG, and annotated with the JGI Annotation pipeline. Mitochondrial genome was assembled separately and is available in the downloads section.

Summary statistics for the Aspergillus floccosus CBS 116.37 v1.0 release are below.
Genome Assembly
Genome Assembly size (Mbp) 30.55
Sequencing read coverage depth 92.7x
# of contigs 239
# of scaffolds 224
# of scaffolds >= 2Kbp 218
Scaffold N50 39
Scaffold L50 (Mbp) 0.25
# of gaps 15
% of scaffold length in gaps 0.0%
Three largest Scaffolds (Mbp) 0.74, 0.63, 0.60


ESTs Data set # sequences total # mapped to genome % mapped to genome
EstClusters ESTclusters 24863 24560 98.8%
Ests est.fasta 60941693 24263195 39.8%


Gene Models FilteredModels1
length (bp) of: average median
gene 1833 1583
transcript 1666 1434
exon 520 306
intron 78 59
description:
protein length (aa) 473 401
exons per gene 3.20 3
# of gene models 11810


Funding

The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.