Info • Aspergillus foveolata CBS 279.81 v1.0

Status

[May 2016] The Aspergillus foveolata CBS 279.81 genome was sequenced with Illumina, assembled with AllPathsLG, and annotated with the JGI Annotation pipeline. Mitochondrial genome was assembled separately and is available in the downloads section.

Summary statistics for the Aspergillus foveolata v1.0 release are below.
Genome Assembly
Genome Assembly size (Mbp) 31.78
Sequencing read coverage depth 90.3x
# of contigs 478
# of scaffolds 425
# of scaffolds >= 2Kbp 352
Scaffold N50 25
Scaffold L50 (Mbp) 0.39
# of gaps 53
% of scaffold length in gaps 0.1%
Three largest Scaffolds (Mbp) 1.58, 1.22, 1.20


ESTs Data set # sequences total # mapped to genome % mapped to genome
EstClusters ESTclusters 26651 24998 93.8%
Ests est.fasta 31666488 28167472 89.0%


Gene Models FilteredModels1
length (bp) of: average median
gene 1868 1615
transcript 1692 1449
exon 520 307
intron 80 60
description:
protein length (aa) 481 402
exons per gene 3.25 3
# of gene models 11115


Funding

The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.