Status
[March 2016] The Aspergillus fructiculosa CBS 989.72 genome was sequenced with Illumina, assembled with AllPathsLG, and annotated with the JGI Annotation pipeline
Summary statistics for the Aspergillus fructiculosa v1.0
release are below.
| Genome Assembly | |
| Genome Assembly size (Mbp) | 34.34 |
| Sequencing read coverage depth | 97.5x |
| # of contigs | 365 |
| # of scaffolds | 279 |
| # of scaffolds >= 2Kbp | 242 |
| Scaffold N50 | 24 |
| Scaffold L50 (Mbp) | 0.44 |
| # of gaps | 86 |
| % of scaffold length in gaps | 0.2% |
| Three largest Scaffolds (Mbp) | 1.47, 1.46, 1.06 |
| ESTs | Data set | # sequences total | # mapped to genome | % mapped to genome |
| EstClusters | ESTclusters | 28756 | 26648 | 92.7% |
| Ests | est.fasta | 31414914 | 30693415 | 97.7% |
| Gene Models | FilteredModels1 | |
| length (bp) of: | average | median |
| gene | 1863 | 1606 |
| transcript | 1692 | 1452 |
| exon | 531 | 316 |
| intron | 80 | 60 |
| description: | ||
| protein length (aa) | 474 | 391 |
| exons per gene | 3.19 | 3 |
| # of gene models | 11612 |
Collaborators
Links
Funding
The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.
