Info • Aspergillus fructiculosus v1.0

Status

[March 2016] The Aspergillus fructiculosa CBS 989.72 genome was sequenced with Illumina, assembled with AllPathsLG, and annotated with the JGI Annotation pipeline

Summary statistics for the Aspergillus fructiculosa v1.0 release are below.
Genome Assembly
Genome Assembly size (Mbp) 34.34
Sequencing read coverage depth 97.5x
# of contigs 365
# of scaffolds 279
# of scaffolds >= 2Kbp 242
Scaffold N50 24
Scaffold L50 (Mbp) 0.44
# of gaps 86
% of scaffold length in gaps 0.2%
Three largest Scaffolds (Mbp) 1.47, 1.46, 1.06


ESTs Data set # sequences total # mapped to genome % mapped to genome
EstClusters ESTclusters 28756 26648 92.7%
Ests est.fasta 31414914 30693415 97.7%


Gene Models FilteredModels1
length (bp) of: average median
gene 1863 1606
transcript 1692 1452
exon 531 316
intron 80 60
description:
protein length (aa) 474 391
exons per gene 3.19 3
# of gene models 11612


Funding

The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.