Join us for PhycoCosm and MycoCosm webinars on March 9 and 11, 2021!
Info • Aspergillus fumigatiaffinis CBS 117186 v1.0

Status

[April 2017] The Aspergillus fumigatiaffinis CBS 117186 genome was sequenced with Illumina, assembled with AllPathsLG, and annotated with the JGI Annotation pipeline. Mitochondrial genome was assembled separately and is available in the downloads section.

Summary statistics for the Aspergillus fumigatiaffinis CBS 117186 v1.0 release are below.
Genome Assembly
Genome Assembly size (Mbp) 33.22
Sequencing read coverage depth 87.6x
# of contigs 226
# of scaffolds 201
# of scaffolds >= 2Kbp 164
Scaffold N50 18
Scaffold L50 (Mbp) 0.59
# of gaps 25
% of scaffold length in gaps 0.0%
Three largest Scaffolds (Mbp) 1.77, 1.34, 1.19


ESTs Data set # sequences total # mapped to genome % mapped to genome
EstClusters ESTclusters 29509 28854 97.8%
Ests est.fasta 31126257 27673428 88.9%


Gene Models FilteredModels1
length (bp) of: average median
gene 1811 1569
transcript 1643 1425
exon 522 309
intron 80 61
description:
protein length (aa) 466 386
exons per gene 3.15 3
# of gene models 11917


Funding

The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.