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Info • Aspergillus fumisynnematus IBT 28474 v1.0

Status

[April 2017] The Aspergillus fumisynnematus IBT 28474 genome was sequenced with Illumina, assembled with AllPathsLG, and annotated with the JGI Annotation pipeline. Mitochondrial genome was assembled separately and is available in the downloads section.

Summary statistics for the Aspergillus fumisynnematus IBT 28474 v1.0 release are below.
Genome Assembly
Genome Assembly size (Mbp) 32.13
Sequencing read coverage depth 93.2x
# of contigs 430
# of scaffolds 399
# of scaffolds >= 2Kbp 338
Scaffold N50 49
Scaffold L50 (Mbp) 0.20
# of gaps 31
% of scaffold length in gaps 0.0%
Three largest Scaffolds (Mbp) 0.92, 0.56, 0.55


ESTs Data set # sequences total # mapped to genome % mapped to genome
EstClusters ESTclusters 38816 37851 97.5%
Ests est.fasta 72016021 63575501 88.3%


Gene Models FilteredModels1
length (bp) of: average median
gene 1844 1612
transcript 1680 1461
exon 538 322
intron 79 61
description:
protein length (aa) 458 378
exons per gene 3.12 3
# of gene models 11626


Funding

The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.