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Info • Aspergillus haitiensis CBS 468.91 v1.0

Status

[June 2019] The Aspergillus haitiensis CBS 468.91 v1.0 genome was sequenced with Illumina, assembled with AllPathsLG, and annotated with the JGI Annotation Pipeline. Mitochondrial genome was assembled separately and is available in the downloads section.

Summary statistics for the Aspergillus haitiensis CBS 468.91 v1.0 release are below.
Genome Assembly
Genome Assembly size (Mbp) 35.85
Sequencing read coverage depth 82.6x
# of contigs 1800
# of scaffolds 1702
# of scaffolds >= 2Kbp 1519
Scaffold N50 259
Scaffold L50 (Mbp) 0.04
# of gaps 98
% of scaffold length in gaps 0.1%
Three largest Scaffolds (Mbp) 0.24, 0.23, 0.22


ESTs Data set # sequences total # mapped to genome % mapped to genome
EstClusters ESTclusters 57384 52002 90.6%
Ests est.fasta 124210498 122545250 98.7%


Gene Models FilteredModels1
length (bp) of: average median
gene 2017 1765
transcript 1801 1565
exon 549 331
intron 97 72
description:
protein length (aa) 491 411
exons per gene 3.28 3
# of gene models 11396


Funding

The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.