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Info • Aspergillus iizukae CBS 541.69 v1.0

Status

[April 2017] The Aspergillus iizukae CBS 541.69 genome was sequenced with Illumina, assembled with AllPathsLG, and annotated with the JGI Annotation pipeline. Mitochondrial genome was assembled separately and is available in the downloads section.

Summary statistics for the Aspergillus iizukae CBS 541.69 v1.0 release are below.
Genome Assembly
Genome Assembly size (Mbp) 32.66
Sequencing read coverage depth 79x
# of contigs 239
# of scaffolds 223
# of scaffolds >= 2Kbp 199
Scaffold N50 26
Scaffold L50 (Mbp) 0.41
# of gaps 16
% of scaffold length in gaps 0.0%
Three largest Scaffolds (Mbp) 1.14, 1.12, 1.05


ESTs Data set # sequences total # mapped to genome % mapped to genome
EstClusters ESTclusters 39164 38759 99.0%
Ests est.fasta 62166955 50657390 81.5%


Gene Models FilteredModels1
length (bp) of: average median
gene 1843 1601
transcript 1670 1452
exon 541 328
intron 85 62
description:
protein length (aa) 465 389
exons per gene 3.09 3
# of gene models 12279


Funding

The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.