Join us for PhycoCosm and MycoCosm webinars on March 9 and 11, 2021!
Info • Aspergillus implicatus CBS 484.95 v1.0

Status

[November 2016] The Aspergillus implicatus CBS 484.95 genome was sequenced with Illumina, assembled with AllPathsLG, and annotated with the JGI Annotation pipeline. Mitochondrial genome was assembled separately and is available in the downloads section.

Summary statistics for the Aspergillus implicatus v1.0 release are below.
Genome Assembly
Genome Assembly size (Mbp) 39.20
Sequencing read coverage depth 72.1x
# of contigs 407
# of scaffolds 372
# of scaffolds >= 2Kbp 235
Scaffold N50 36
Scaffold L50 (Mbp) 0.36
# of gaps 35
% of scaffold length in gaps 0.0%
Three largest Scaffolds (Mbp) 1.24, 0.92, 0.91


ESTs Data set # sequences total # mapped to genome % mapped to genome
EstClusters ESTclusters 31634 29104 92.0%
Ests est.fasta 62097782 58119448 93.6%


Gene Models FilteredModels1
length (bp) of: average median
gene 1911 1643
transcript 1720 1474
exon 531 321
intron 87 68
description:
protein length (aa) 485 403
exons per gene 3.24 3
# of gene models 13656


Funding

The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.