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Info • Aspergillus indologenus CBS 114.80 v1.0

Status

Assembly v1 (Jul 2014) is a minimal draft assembly of Illumina gDNA reads using AllPathsLG and Velvet.

Summary statistics for the Aspergillus indologenus CBS 114.80 v1.0 release are below.
Genome Assembly
Genome Assembly size (Mbp) 38.59
Sequencing read coverage depth 85.3x
# of contigs 489
# of scaffolds 334
# of scaffolds >= 2Kbp 322
Scaffold N50 49
Scaffold L50 (Mbp) 0.24
# of gaps 155
% of scaffold length in gaps 0.2%
Three largest Scaffolds (Mbp) 1.13, 0.78, 0.75


ESTs Data set # sequences total # mapped to genome % mapped to genome
Other JGI_RNA_contigs 27806 27687 99.6%


Gene Models FilteredModels1
length (bp) of: average median
gene 1840 1578
transcript 1632 1404
exon 524 317
intron 100 66
description:
protein length (aa) 468 388
exons per gene 3.12 3
# of gene models 12163


Genome Reference(s)

Funding

The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.