Info • Aspergillus indicus v2.0

Status

[March 2016] The Aspergillus indicus CBS 952.97 genome was sequenced with Illumina, assembled with AllPathsLG, and annotated with the JGI Annotation pipeline

Summary statistics for the Aspergillus indicus v1.0 release are below.
Genome Assembly
Genome Assembly size (Mbp) 32.49
Sequencing read coverage depth 56.5x
# of contigs 645
# of scaffolds 601
# of scaffolds >= 2Kbp 500
Scaffold N50 61
Scaffold L50 (Mbp) 0.16
# of gaps 44
% of scaffold length in gaps 0.1%
Three largest Scaffolds (Mbp) 0.63, 0.58, 0.54


ESTs Data set # sequences total # mapped to genome % mapped to genome
EstClusters ESTclusters 35100 28973 82.5%
Ests est.fasta 42025504 31498616 75.0%


Gene Models FilteredModels1
length (bp) of: average median
gene 1882 1635
transcript 1708 1481
exon 528 314
intron 80 60
description:
protein length (aa) 483 407
exons per gene 3.23 3
# of gene models 11361


Funding

The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.