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Info • Aspergillus japonicus CBS 114.51 v1.0

Status

Assembly v1 (Dec 2014) is a minimal draft assembly of Illumina gDNA reads using AllPathsLG and Velvet.

Summary statistics for the Aspergillus japonicus CBS 114.51 v1.0 release are below.
Genome Assembly
Genome Assembly size (Mbp) 36.10
Sequencing read coverage depth 100.9x
# of contigs 242
# of scaffolds 163
# of scaffolds >= 2Kbp 161
Scaffold N50 25
Scaffold L50 (Mbp) 0.41
# of gaps 79
% of scaffold length in gaps 0.1%
Three largest Scaffolds (Mbp) 1.44, 1.42, 1.23


ESTs Data set # sequences total # mapped to genome % mapped to genome
Other JGI_RNA_contigs 24436 24242 99.2%


Gene Models FilteredModels1
length (bp) of: average median
gene 1826 1574
transcript 1635 1404
exon 516 309
intron 90 66
description:
protein length (aa) 473 396
exons per gene 3.17 3
# of gene models 12024


Genome Reference(s)

Funding

The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.