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Info • Aspergillus karnatakaensis CBS 102800 v1.0

Status

[April 2017] The Aspergillus karnatakaensis genome was sequenced with Illumina, assembled with AllPathsLG, and annotated with the JGI Annotation pipeline. Mitochondrial genome was assembled separately and is available in the downloads section.

Summary statistics for the Aspergillus karnatakaensis v1.0 release are below.
Genome Assembly
Genome Assembly size (Mbp) 36.26
Sequencing read coverage depth 85x
# of contigs 256
# of scaffolds 239
# of scaffolds >= 2Kbp 212
Scaffold N50 28
Scaffold L50 (Mbp) 0.42
# of gaps 17
% of scaffold length in gaps 0.0%
Three largest Scaffolds (Mbp) 1.33, 1.06, 1.03


ESTs Data set # sequences total # mapped to genome % mapped to genome
EstClusters ESTclusters 35258 34794 98.7%
Ests est.fasta 66661921 45448630 68.2%


Gene Models FilteredModels1
length (bp) of: average median
gene 1819 1585
transcript 1657 1441
exon 526 321
intron 77 58
description:
protein length (aa) 473 400
exons per gene 3.15 3
# of gene models 13540


Funding

The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.