Info • Aspergillus niger (lacticoffeatus) CBS 101883 v1.0

Status

Assembly v1 (May 2014) is a minimal draft assembly of Illumina gDNA reads using AllPathsLG and Velvet.

Summary statistics for the Aspergillus lacticoffeatus CBS 101883 v1.0 release are below.
Genome Assembly
Genome Assembly size (Mbp) 35.86
Sequencing read coverage depth 117.4x
# of contigs 148
# of scaffolds 109
# of scaffolds >= 2Kbp 97
Scaffold N50 12
Scaffold L50 (Mbp) 0.88
# of gaps 39
% of scaffold length in gaps 0.1%
Three largest Scaffolds (Mbp) 4.29, 2.13, 1.70


ESTs Data set # sequences total # mapped to genome % mapped to genome
Other JGI_RNA_contigs 28730 28454 99.0%


Gene Models FilteredModels1
length (bp) of: average median
gene 1847 1589
transcript 1611 1377
exon 465 257
intron 98 65
description:
protein length (aa) 469 389
exons per gene 3.47 3
# of gene models 13083


Genome Reference(s)

Please cite the following publication(s) if you use the data from this genome in your research:

Vesth TC, Nybo JL, Theobald S, Frisvad JC, Larsen TO, Nielsen KF, Hoof JB, Brandl J, Salamov A, Riley R, Gladden JM, Phatale P, Nielsen MT, Lyhne EK, Kogle ME, Strasser K, McDonnell E, Barry K, Clum A, Chen C, LaButti K, Haridas S, Nolan M, Sandor L, Kuo A, Lipzen A, Hainaut M, Drula E, Tsang A, Magnuson JK, Henrissat B, Wiebenga A, Simmons BA, Mäkelä MR, de Vries RP, Grigoriev IV, Mortensen UH, Baker SE, Andersen MR
Investigation of inter- and intraspecies variation through genome sequencing of Aspergillus section Nigri.
Nat Genet. 2018 Dec;50(12):1688-1695. doi: 10.1038/s41588-018-0246-1

Funding

The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.