Info • Aspergillus luppii CBS 653.74 v1.0

Status

[April 2017] The Aspergillus luppii CBS 653.74 genome was sequenced with Illumina, assembled with AllPathsLG, and annotated with the JGI Annotation pipeline. Mitochondrial genome was assembled separately and is available in the downloads section.

Summary statistics for the Aspergillus luppii v1.0 release are below.
Genome Assembly
Genome Assembly size (Mbp) 33.32
Sequencing read coverage depth 96.9x
# of contigs 457
# of scaffolds 383
# of scaffolds >= 2Kbp 330
Scaffold N50 47
Scaffold L50 (Mbp) 0.20
# of gaps 74
% of scaffold length in gaps 0.2%
Three largest Scaffolds (Mbp) 0.80, 0.75, 0.72


ESTs Data set # sequences total # mapped to genome % mapped to genome
EstClusters ESTclusters 30715 29824 97.1%
Ests est.fasta 49827331 39996217 80.3%


Gene Models FilteredModels1
length (bp) of: average median
gene 1828 1587
transcript 1648 1431
exon 521 314
intron 85 63
description:
protein length (aa) 457 384
exons per gene 3.17 3
# of gene models 11947


Funding

The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.