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Info • Aspergillus mangaliensis DTO 316-C1 v1.0

Status

[April 2021] The Aspergillus mangaliensis DTO 316-C1 v1.0 genome was sequenced with Illumina, assembled with AllPathsLG, and annotated with the JGI Annotation Pipeline. Mitochondrial genome was assembled separately and is available in the downloads section.

Genome Assembly
Genome Assembly size (Mbp) 33.80
Sequencing read coverage depth 66.7x
# of contigs 262
# of scaffolds 243
# of scaffolds >= 2Kbp 226
Scaffold N50 32
Scaffold L50 (Mbp) 0.33
# of gaps 19
% of scaffold length in gaps 0.0%
Three largest Scaffolds (Mbp) 0.97, 0.83, 0.82


Please note that this transcriptome data is contaminated. 8.20% rRNA; Unmapped contigs BLAST to genus Aspergillus, Fusarium, and some bacterial genera.
ESTs Data set # sequences total # mapped to genome % mapped to genome
EstClusters ESTclusters 59598 41722 70.0%
Ests est.fasta 209174487 206984361 99.0%


Gene Models FilteredModels1
length (bp) of: average median
gene 1992 1751
transcript 1815 1592
exon 561 346
intron 81 62
description:
protein length (aa) 481 404
exons per gene 3.24 3
# of gene models 12393


Funding

The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.