Our systems will be offline for scheduled maintenance in our facility on Wed Aug 24 from 8am until 6pm PDT.
Info • Aspergillus megasporus DTO 048-I3 v1.0

Status

[February 2021] The Aspergillus megasporus DTO 048-I3 v1.0 genome was sequenced with Illumina, assembled with AllPathsLG, and annotated with the JGI Annotation Pipeline. Mitochondrial genome was assembled separately and is available in the downloads section.

Genome Assembly
Genome Assembly size (Mbp) 27.68
Sequencing read coverage depth 122.9x
# of contigs 510
# of scaffolds 482
# of scaffolds >= 2Kbp 450
Scaffold N50 72
Scaffold L50 (Mbp) 0.12
# of gaps 28
% of scaffold length in gaps 0.1%
Three largest Scaffolds (Mbp) 0.44, 0.39, 0.35


ESTs Data set # sequences total # mapped to genome % mapped to genome
EstClusters ESTclusters 42869 40924 95.5%
Ests est.fasta 248619193 242964745 97.7%


Gene Models FilteredModels1
length (bp) of: average median
gene 1864 1615
transcript 1703 1472
exon 548 338
intron 78 59
description:
protein length (aa) 446 363
exons per gene 3.11 3
# of gene models 10914


Funding

The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.