Info • Aspergillus muricatus v1.0

Status

[August 2016] The Aspergillus muricatus CBS 112808 genome was sequenced with Illumina, assembled with AllPathsLG, and annotated with the JGI Annotation pipeline. Mitochondrial genome was assembled separately and is available in the downloads section.

Summary statistics for the Aspergillus muricatus v1.0 release are below.
Genome Assembly
Genome Assembly size (Mbp) 34.12
Sequencing read coverage depth 87.4x
# of contigs 375
# of scaffolds 353
# of scaffolds >= 2Kbp 275
Scaffold N50 29
Scaffold L50 (Mbp) 0.38
# of gaps 22
% of scaffold length in gaps 0.0%
Three largest Scaffolds (Mbp) 1.17, 0.97, 0.97


ESTs Data set # sequences total # mapped to genome % mapped to genome
EstClusters ESTclusters 28145 27608 98.1%
Ests est.fasta 39365183 39051174 99.2%


Gene Models FilteredModels1
length (bp) of: average median
gene 1857 1595
transcript 1663 1425
exon 510 302
intron 88 64
description:
protein length (aa) 472 393
exons per gene 3.26 3
# of gene models 11718


Funding

The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.