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Info • Aspergillus navahoensis v1.0

Status

[March 2016] The Aspergillus navahoensis CBS 351.81 genome was sequenced with Illumina, assembled with AllPathsLG, and annotated with the JGI Annotation pipeline

Summary statistics for the Aspergillus navahoensis v1.0 release are below.
Genome Assembly
Genome Assembly size (Mbp) 32.76
Sequencing read coverage depth 79.3x
# of contigs 792
# of scaffolds 732
# of scaffolds >= 2Kbp 631
Scaffold N50 74
Scaffold L50 (Mbp) 0.13
# of gaps 60
% of scaffold length in gaps 0.1%
Three largest Scaffolds (Mbp) 0.68, 0.58, 0.43


ESTs Data set # sequences total # mapped to genome % mapped to genome
EstClusters ESTclusters 35280 33237 94.2%
Ests est.fasta 43230172 42389250 98.1%


Gene Models FilteredModels1
length (bp) of: average median
gene 1843 1600
transcript 1673 1448
exon 528 315
intron 80 60
description:
protein length (aa) 466 387
exons per gene 3.17 3
# of gene models 11625


Funding

The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.