Status
[March 2016] The Aspergillus navahoensis CBS 351.81 genome was sequenced with Illumina, assembled with AllPathsLG, and annotated with the JGI Annotation pipeline
Summary statistics for the Aspergillus navahoensis v1.0
release are below.
| Genome Assembly | |
| Genome Assembly size (Mbp) | 32.76 |
| Sequencing read coverage depth | 79.3x |
| # of contigs | 792 |
| # of scaffolds | 732 |
| # of scaffolds >= 2Kbp | 631 |
| Scaffold N50 | 74 |
| Scaffold L50 (Mbp) | 0.13 |
| # of gaps | 60 |
| % of scaffold length in gaps | 0.1% |
| Three largest Scaffolds (Mbp) | 0.68, 0.58, 0.43 |
| ESTs | Data set | # sequences total | # mapped to genome | % mapped to genome |
| EstClusters | ESTclusters | 35280 | 33237 | 94.2% |
| Ests | est.fasta | 43230172 | 42389250 | 98.1% |
| Gene Models | FilteredModels1 | |
| length (bp) of: | average | median |
| gene | 1843 | 1600 |
| transcript | 1673 | 1448 |
| exon | 528 | 315 |
| intron | 80 | 60 |
| description: | ||
| protein length (aa) | 466 | 387 |
| exons per gene | 3.17 | 3 |
| # of gene models | 11625 |
Collaborators
Links
Funding
The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.
