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Info • Aspergillus neoechinulatus CBS120.55 v1.0

Status

[July 2016] The Aspergillus neoechinulatus CBS 120.55 genome was sequenced with Illumina, assembled with AllPathsLG, and annotated with the JGI Annotation pipeline. Mitochondrial genome was assembled separately and is available in the downloads section.

Summary statistics for the Aspergillus neoechinulatus v1.0 release are below.
Genome Assembly
Genome Assembly size (Mbp) 30.67
Sequencing read coverage depth 132.3x
# of contigs 293
# of scaffolds 236
# of scaffolds >= 2Kbp 206
Scaffold N50 19
Scaffold L50 (Mbp) 0.50
# of gaps 57
% of scaffold length in gaps 0.1%
Three largest Scaffolds (Mbp) 1.32, 1.21, 1.19


ESTs Data set # sequences total # mapped to genome % mapped to genome
EstClusters ESTclusters 26685 25135 94.2%
Ests est.fasta 46907673 42427902 90.4%


Gene Models FilteredModels1
length (bp) of: average median
gene 1911 1654
transcript 1739 1502
exon 534 318
intron 78 60
description:
protein length (aa) 491 415
exons per gene 3.26 3
# of gene models 10504


Funding

The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.