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Info • Aspergillus neoniger CBS 115656 v1.0

Status

Assembly v1 (May 2014) is a minimal draft assembly of Illumina gDNA reads using AllPathsLG and Velvet.

Summary statistics for the Aspergillus neoniger CBS 115656 v1.0 release are below.
Genome Assembly
Genome Assembly size (Mbp) 35.42
Sequencing read coverage depth 151.4x
# of contigs 206
# of scaffolds 169
# of scaffolds >= 2Kbp 149
Scaffold N50 18
Scaffold L50 (Mbp) 0.71
# of gaps 37
% of scaffold length in gaps 0.1%
Three largest Scaffolds (Mbp) 1.66, 1.41, 1.31


ESTs Data set # sequences total # mapped to genome % mapped to genome
Other JGI_RNA_contigs 25575 25262 98.8%


Gene Models FilteredModels1
length (bp) of: average median
gene 1848 1591
transcript 1646 1423
exon 497 291
intron 90 63
description:
protein length (aa) 477 401
exons per gene 3.31 3
# of gene models 11939


Genome Reference(s)

Funding

The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.