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Info • Aspergillus neowarcupii IBT 29024 v1.0

Status

[November 2019] The Aspergillus neowarcupii IBT 29024 v1.0 genome was sequenced with Illumina, assembled with AllPathsLG, and annotated with the JGI Annotation Pipeline. Mitochondrial genome was assembled separately and is available in the downloads section.

Summary statistics for the Aspergillus neowarcupii v1.0 release are below.
Genome Assembly
Genome Assembly size (Mbp) 30.34
Sequencing read coverage depth 90.3x
# of contigs 335
# of scaffolds 296
# of scaffolds >= 2Kbp 256
Scaffold N50 20
Scaffold L50 (Mbp) 0.47
# of gaps 39
% of scaffold length in gaps 0.1%
Three largest Scaffolds (Mbp) 1.39, 1.38, 1.14


ESTs Data set # sequences total # mapped to genome % mapped to genome
EstClusters ESTclusters 30025 28204 93.9%
Ests est.fasta 36694379 34847601 95.0%


Gene Models FilteredModels1
length (bp) of: average median
gene 1937 1677
transcript 1767 1530
exon 548 331
intron 78 60
description:
protein length (aa) 483 404
exons per gene 3.22 3
# of gene models 10853


Funding

The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.