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Info • Aspergillus niger NRRL3

Status

Mar 2014. The Aspergillus niger NRRL3 genome was sequenced not by JGI, but by Adrian Tsang's lab at Concordia University. The NRRL3 genome was assembled to 15 conigs with seven gaps corresponding to seven of the eight putative centromeres, all 16 telomeres were assembled. Strain NRRL3 is near identical to ATCC1015 with fewer than 20 SNPs between them.

Summary statistics for the Aspergillus niger NRRL3 v1.0 release are below.
Genome Assembly
Genome Assembly size (Mbp) 35.25
Sequencing read coverage depth 10x
# of contigs 15
# of scaffolds 15
# of scaffolds >= 2Kbp 15
Scaffold N50 5
Scaffold L50 (Mbp) 2.81
# of gaps 0
% of scaffold length in gaps 0.0%
Three largest Scaffolds (Mbp) 4.30, 3.78, 3.76


Gene Models ExternalModels
length (bp) of: average median
gene 1657 1417
transcript 1500 1266
exon 464 244
intron 72 62
description:
protein length (aa) 500 422
exons per gene 3.23 3
# of gene models 11846


Collaborators

Adrian Tsang, Department of Biology, Concordia University.

Genome Reference(s)

Links

Funding

This project was not sequenced at the JGI.