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Info • Aspergillus novofumigatus IBT 16806 v1.0

Status

Assembly v1 (January 2014) is a minimal draft assembly of PacBio gDNA reads. A total of 62 scaffolds and 32.4 Mbp were assembled using HBAR.

Summary statistics for the Aspergillus novofumigatus IBT 16806 v1.0 release are below.
Genome Assembly
Genome Assembly size (Mbp) 32.44
Sequencing read coverage depth 29.67x
# of contigs 62
# of scaffolds 62
# of scaffolds >= 2Kbp 62
Scaffold N50 4
Scaffold L50 (Mbp) 3.77
# of gaps 0
% of scaffold length in gaps 0.0%
Three largest Scaffolds (Mbp) 5.12, 4.38, 4.09


ESTs Data set # sequences total # mapped to genome % mapped to genome
Other JGI_RNA_contigs 28454 28244 99.3%


Gene Models FilteredModels1
length (bp) of: average median
gene 1729 1490
transcript 1547 1324
exon 463 279
intron 80 60
description:
protein length (aa) 452 373
exons per gene 3.35 3
# of gene models 11549


Genome Reference(s)

Funding

The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.