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Info • Aspergillus ochraceus ITEM 7043 v1.0

Status

[June 2021] The Aspergillus ochraceus ITEM 7043 v1.0 genome was sequenced with PacBio, assembled with Flye, and annotated with the JGI Annotation Pipeline. Mitochondrial genome was assembled separately and is available in the downloads section.

Genome Assembly
Genome Assembly size (Mbp) 35.60
Sequencing read coverage depth 91.03x
# of contigs 8
# of scaffolds 8
# of scaffolds >= 2Kbp 8
Scaffold N50 3
Scaffold L50 (Mbp) 5.39
# of gaps 0
% of scaffold length in gaps 0.0%
Three largest Scaffolds (Mbp) 6.23, 6.21, 5.39


ESTs Data set # sequences total # mapped to genome % mapped to genome
EstClusters ESTclusters 40772 39622 97.2%
Ests est.fasta 153690013 152477045 99.2%


Gene Models FilteredModels1
length (bp) of: average median
gene 1909 1666
transcript 1722 1494
exon 525 314
intron 84 64
description:
protein length (aa) 487 407
exons per gene 3.28 3
# of gene models 12066


Funding

The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.