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Info • Aspergillus oerlinghausenensis CBS 139183 v1.0

Status

[November 2019] The Aspergillus oerlinghausenensis CBS 139183 v1.0 genome was sequenced with Illumina, assembled with SPAdes, and annotated with the JGI Annotation Pipeline. Mitochondrial genome was assembled separately and is available in the downloads section.

Summary statistics for the Aspergillus oerlinghausenensis CBS 139183v1.0 release are below.
Genome Assembly
Genome Assembly size (Mbp) 32.35
Sequencing read coverage depth 146.15x
# of contigs 605
# of scaffolds 584
# of scaffolds >= 2Kbp 537
Scaffold N50 68
Scaffold L50 (Mbp) 0.15
# of gaps 21
% of scaffold length in gaps 0.0%
Three largest Scaffolds (Mbp) 0.57, 0.53, 0.48


ESTs Data set # sequences total # mapped to genome % mapped to genome
EstClusters ESTclusters 46374 44948 96.9%
Ests est.fasta 130370334 129391001 99.2%


Gene Models FilteredModels1
length (bp) of: average median
gene 1967 1718
transcript 1794 1560
exon 551 329
intron 79 61
description:
protein length (aa) 481 403
exons per gene 3.25 3
# of gene models 9989


Funding

The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.