Info • Aspergillus oryzae RIB40


The genome sequence and gene prediction of Aspergillus oryzae were not determined by the JGI, but were downloaded from the Aspergillus Genome Database (AspGD) on July 19 2012. Please note that this copy of the genome is not maintained by AspGD and is therefore not automatically updated. This copy of the genome does not include the mitochondrial chromosome or genes. The JGI Annotation Pipeline was used to add additional functional annotation to AspGD's chromosomes and proteins.
Summary statistics for the Aspergillus oryzae RIB40 v1.0 release are below.
Genome Assembly
Genome Assembly size (Mbp} 37.88
Sequencing read coverage depth 1
# of contigs 28
# of scaffolds 11
# of scaffolds >= 2Kbp 11
Scaffold N50 4
Scaffold L50 (Mbp) 4.89
# of gaps 17
% of scaffold length in gaps 2.1%
Three largest Scaffolds (Mbp) 6.52, 6.26, 5.12

Gene Models ExternalModels
length (bp) of: average median
gene 1652 1401
transcript 1434 1218
exon 482 272
intron 113 63
protein length (aa) 453 377
exons per gene 2.98 3
# of gene models 12030

Genome Reference(s)


This project was not sequenced at the JGI.