Info • Aspergillus pachycristatus IBT 23550 v1.0

Status

[June 2021] The Aspergillus pachycristatus IBT 23550 v1.0 genome was sequenced with Illumina, assembled with AllPathsLG, and annotated with the JGI Annotation Pipeline. Mitochondrial genome was assembled separately and is available in the downloads section.

Genome Assembly
Genome Assembly size (Mbp) 32.19
Sequencing read coverage depth 58.96x
# of contigs 365
# of scaffolds 327
# of scaffolds >= 2Kbp 297
Scaffold N50 43
Scaffold L50 (Mbp) 0.23
# of gaps 38
% of scaffold length in gaps 0.1%
Three largest Scaffolds (Mbp) 1.01, 0.82, 0.65


ESTs Data set # sequences total # mapped to genome % mapped to genome
EstClusters ESTclusters 38798 37916 97.7%
Ests est.fasta 135796603 134396807 99.0%


Gene Models FilteredModels1
length (bp) of: average median
gene 2022 1764
transcript 1845 1603
exon 563 337
intron 80 60
description:
protein length (aa) 499 418
exons per gene 3.27 3
# of gene models 10869


Funding

The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.