Info • Aspergillus parasiticus CBS 117618 v1.0

Status

[September 2016] The Aspergillus parasiticus CBS 117618 genome was sequenced with Illumina, assembled with AllPathsLG, and annotated with the JGI Annotation pipeline. Mitochondrial genome was assembled separately and is available in the downloads section.

Summary statistics for the Aspergillus parasiticus v1.0 release are below.
Genome Assembly
Genome Assembly size (Mbp) 38.39
Sequencing read coverage depth 66.8x
# of contigs 286
# of scaffolds 270
# of scaffolds >= 2Kbp 224
Scaffold N50 34
Scaffold L50 (Mbp) 0.35
# of gaps 16
% of scaffold length in gaps 0.0%
Three largest Scaffolds (Mbp) 1.23, 1.07, 0.92


ESTs Data set # sequences total # mapped to genome % mapped to genome
EstClusters ESTclusters 29613 28585 96.5%
Ests est.fasta 57319012 57090759 99.6%


Gene Models FilteredModels1
length (bp) of: average median
gene 1847 1609
transcript 1659 1446
exon 514 308
intron 86 62
description:
protein length (aa) 465 392
exons per gene 3.23 3
# of gene models 13752


Funding

The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.