Info • Aspergillus pseudodeflectus v1.0

Status

[March 2017] The Aspergillus pseudodeflectus CBS 756.74 genome was sequenced with Illumina, assembled with AllPathsLG, and annotated with the JGI Annotation pipeline. Mitochondrial genome was assembled separately and is available in the downloads section.

Summary statistics for the Aspergillus pseudodeflectus v1.0 release are below.
Genome Assembly
Genome Assembly size (Mbp) 39.07
Sequencing read coverage depth 79.6x
# of contigs 193
# of scaffolds 179
# of scaffolds >= 2Kbp 165
Scaffold N50 22
Scaffold L50 (Mbp) 0.53
# of gaps 14
% of scaffold length in gaps 0.0%
Three largest Scaffolds (Mbp) 2.47, 1.67, 1.54


ESTs Data set # sequences total # mapped to genome % mapped to genome
EstClusters ESTclusters 33717 33094 98.2%
Ests est.fasta 67784149 53639259 79.1%


Gene Models FilteredModels1
length (bp) of: average median
gene 1803 1577
transcript 1635 1431
exon 520 318
intron 80 61
description:
protein length (aa) 464 391
exons per gene 3.14 3
# of gene models 14450


Funding

The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.