Info • Aspergillus petrakii CBS 105.57 v1.0

Status

[September 2016] The Aspergillus petrakii CBS 105.57 genome was sequenced with Illumina, assembled with AllPathsLG, and annotated with the JGI Annotation pipeline. Mitochondrial genome was assembled separately and is available in the downloads section.

Summary statistics for the Aspergillus petrakii v1.0 release are below.
Genome Assembly
Genome Assembly size (Mbp) 35.79
Sequencing read coverage depth 60.6x
# of contigs 573
# of scaffolds 561
# of scaffolds >= 2Kbp 531
Scaffold N50 87
Scaffold L50 (Mbp) 0.12
# of gaps 12
% of scaffold length in gaps 0.0%
Three largest Scaffolds (Mbp) 0.61, 0.46, 0.45


ESTs Data set # sequences total # mapped to genome % mapped to genome
EstClusters ESTclusters 32903 32443 98.6%
Ests est.fasta 63908761 63155761 98.8%


Gene Models FilteredModels1
length (bp) of: average median
gene 1851 1599
transcript 1663 1431
exon 518 307
intron 87 64
description:
protein length (aa) 466 388
exons per gene 3.21 3
# of gene models 12569


Funding

The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.