Info • Aspergillus pseudotamarii CBS 117625 v1.0

Status

[October 2016] The Aspergillus pseudotamarii CBS 117625 genome was sequenced with Illumina, assembled with AllPathsLG, and annotated with the JGI Annotation pipeline. Mitochondrial genome was assembled separately and is available in the downloads section.

Summary statistics for the Aspergillus pseudotamarii v1.0 release are below.
Genome Assembly
Genome Assembly size (Mbp) 38.24
Sequencing read coverage depth 82.6x
# of contigs 292
# of scaffolds 249
# of scaffolds >= 2Kbp 202
Scaffold N50 29
Scaffold L50 (Mbp) 0.41
# of gaps 43
% of scaffold length in gaps 0.1%
Three largest Scaffolds (Mbp) 1.59, 1.17, 1.05


ESTs Data set # sequences total # mapped to genome % mapped to genome
EstClusters ESTclusters 42126 41610 98.8%
Ests est.fasta 29971231 29762655 99.3%


Gene Models FilteredModels1
length (bp) of: average median
gene 1825 1594
transcript 1640 1433
exon 522 309
intron 89 63
description:
protein length (aa) 463 390
exons per gene 3.14 3
# of gene models 13428


Genome Reference(s)

Funding

The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.