Status
[October 2016] The Aspergillus pseudotamarii CBS 117625 genome was sequenced with Illumina, assembled with AllPathsLG, and annotated with the JGI Annotation pipeline. Mitochondrial genome was assembled separately and is available in the downloads section.
Summary statistics for the Aspergillus pseudotamarii v1.0
release are below.
| Genome Assembly | |
| Genome Assembly size (Mbp) | 38.24 |
| Sequencing read coverage depth | 82.6x |
| # of contigs | 292 |
| # of scaffolds | 249 |
| # of scaffolds >= 2Kbp | 202 |
| Scaffold N50 | 29 |
| Scaffold L50 (Mbp) | 0.41 |
| # of gaps | 43 |
| % of scaffold length in gaps | 0.1% |
| Three largest Scaffolds (Mbp) | 1.59, 1.17, 1.05 |
| ESTs | Data set | # sequences total | # mapped to genome | % mapped to genome |
| EstClusters | ESTclusters | 42126 | 41610 | 98.8% |
| Ests | est.fasta | 29971231 | 29762655 | 99.3% |
| Gene Models | FilteredModels1 | |
| length (bp) of: | average | median |
| gene | 1825 | 1594 |
| transcript | 1640 | 1433 |
| exon | 522 | 309 |
| intron | 89 | 63 |
| description: | ||
| protein length (aa) | 463 | 390 |
| exons per gene | 3.14 | 3 |
| # of gene models | 13428 |
Collaborators
Genome Reference(s)
Please cite the following publication(s) if you use the data from this genome in your research:
Kjærbølling I, Vesth T, Frisvad JC, Nybo JL, Theobald S, Kildgaard S, Petersen TI, Kuo A, Sato A, Lyhne EK, Kogle ME, Wiebenga A, Kun RS, Lubbers RJM, Mäkelä MR, Barry K, Chovatia M, Clum A, Daum C, Haridas S, He G, LaButti K, Lipzen A, Mondo S, Pangilinan J, Riley R, Salamov A, Simmons BA, Magnuson JK, Henrissat B, Mortensen UH, Larsen TO, de Vries RP, Grigoriev IV, Machida M, Baker SE, Andersen MR
A comparative genomics study of 23 Aspergillus species from section Flavi.
Nat Commun. 2020 Feb 27;11(1):1106. doi: 10.1038/s41467-019-14051-y
Kjærbølling I, Vesth T, Frisvad JC, Nybo JL, Theobald S, Kildgaard S, Petersen TI, Kuo A, Sato A, Lyhne EK, Kogle ME, Wiebenga A, Kun RS, Lubbers RJM, Mäkelä MR, Barry K, Chovatia M, Clum A, Daum C, Haridas S, He G, LaButti K, Lipzen A, Mondo S, Pangilinan J, Riley R, Salamov A, Simmons BA, Magnuson JK, Henrissat B, Mortensen UH, Larsen TO, de Vries RP, Grigoriev IV, Machida M, Baker SE, Andersen MR
A comparative genomics study of 23 Aspergillus species from section Flavi.
Nat Commun. 2020 Feb 27;11(1):1106. doi: 10.1038/s41467-019-14051-y
Links
Funding
The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.
