Status
[August 2021] This genome was not sequenced or assembled at the JGI. Rather, the assembly was downloaded from NCBI on June 30, 2021 and then annotated using the JGI annotation pipeline.
Genome Assembly | |
Genome Assembly size (Mbp) | 29.51 |
Sequencing read coverage depth | |
# of contigs | 334 |
# of scaffolds | 270 |
# of scaffolds >= 2Kbp | 195 |
Scaffold N50 | 15 |
Scaffold L50 (Mbp) | 0.68 |
# of gaps | 64 |
% of scaffold length in gaps | 0.0% |
Three largest Scaffolds (Mbp) | 1.69, 1.59, 1.32 |
ESTs | Data set | # sequences total | # mapped to genome | % mapped to genome |
EstClusters | ESTclusters | 12171 | 12149 | 99.8% |
Ests | est.fasta | 538419045 | 384648155 | 71.4% |
Gene Models | FilteredModels1 | |
length (bp) of: | average | median |
gene | 1885 | 1634 |
transcript | 1707 | 1478 |
exon | 518 | 300 |
intron | 79 | 60 |
description: | ||
protein length (aa) | 495 | 414 |
exons per gene | 3.30 | 3 |
# of gene models | 10945 |
Collaborators
Genome Reference(s)
Please cite the following publication(s) if you use the data from this genome in your research:
Deng S, Dai Z, Swita M, Pomraning KR, Hofstad B, Panisko E, Baker S, Magnuson J
Deletion analysis of the itaconic acid biosynthesis gene cluster components in Aspergillus pseudoterreus ATCC32359.
Appl Microbiol Biotechnol. 2020 May;104(9):3981-3992. doi: 10.1007/s00253-020-10418-0
Deng S, Dai Z, Swita M, Pomraning KR, Hofstad B, Panisko E, Baker S, Magnuson J
Deletion analysis of the itaconic acid biosynthesis gene cluster components in Aspergillus pseudoterreus ATCC32359.
Appl Microbiol Biotechnol. 2020 May;104(9):3981-3992. doi: 10.1007/s00253-020-10418-0
Links
- JGI PhyloGroup Portals: Fungi Dikarya Ascomycota Pezizomycotina Eurotiomycetes Eurotiales Aspergillus
Funding
The work conducted by the U.S. Department of Energy Joint Genome
Institute, a DOE Office of Science User Facility, is supported by
the Office of Science of the U.S. Department of Energy under
Contract No. DE-AC02-05CH11231.