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Info • Aspergillus pseudoviridinutans IBT 34175 v1.0

Status

[November 2019] The Aspergillus pseudoviridinutans IBT 34175 v1.0 genome was sequenced with Illumina, assembled with SPAdes, and annotated with the JGI Annotation Pipeline. Mitochondrial genome was assembled separately and is available in the downloads section.

Summary statistics for the Aspergillus pseudoviridinutans v1.0 release are below.
Genome Assembly
Genome Assembly size (Mbp) 32.18
Sequencing read coverage depth 111.098840199336x
# of contigs 204
# of scaffolds 178
# of scaffolds >= 2Kbp 165
Scaffold N50 21
Scaffold L50 (Mbp) 0.43
# of gaps 26
% of scaffold length in gaps 0.0%
Three largest Scaffolds (Mbp) 1.68, 1.41, 1.03


ESTs Data set # sequences total # mapped to genome % mapped to genome
EstClusters ESTclusters 39971 39112 97.9%
Ests est.fasta 83184585 82597577 99.3%


Gene Models FilteredModels1
length (bp) of: average median
gene 1948 1698
transcript 1778 1545
exon 551 333
intron 78 61
description:
protein length (aa) 482 399
exons per gene 3.23 3
# of gene models 11303


Funding

The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.