Info • Aspergillus pseudoustus CBS 123904 v1.0

Status

[March 2017] The Aspergillus pseudoustus CBS 123904 genome was sequenced with Illumina, assembled with AllPathsLG, and annotated with the JGI Annotation pipeline. Mitochondrial genome was assembled separately and is available in the downloads section.

Summary statistics for the Aspergillus pseudoustus v1.0 release are below.
Genome Assembly
Genome Assembly size (Mbp) 41.22
Sequencing read coverage depth 63.6x
# of contigs 668
# of scaffolds 656
# of scaffolds >= 2Kbp 630
Scaffold N50 101
Scaffold L50 (Mbp) 0.13
# of gaps 12
% of scaffold length in gaps 0.0%
Three largest Scaffolds (Mbp) 0.48, 0.46, 0.44


ESTs Data set # sequences total # mapped to genome % mapped to genome
EstClusters ESTclusters 34320 33672 98.1%
Ests est.fasta 70723849 35255648 49.8%


Gene Models FilteredModels1
length (bp) of: average median
gene 1790 1571
transcript 1621 1417
exon 514 310
intron 81 62
description:
protein length (aa) 465 392
exons per gene 3.15 3
# of gene models 15536


Funding

The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.