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Info • Aspergillus quadrilineatus (gemmatus) CBS 853.96 v1.0

Status

[July 2017] The Aspergillus quadrilineatus CBS 853.96 genome was sequenced with Illumina, assembled with AllPathsLG, and annotated with the JGI Annotation pipeline. Mitochondrial genome was assembled separately and is available in the downloads section.

Summary statistics for the Aspergillus quadrilineatus (gemmatus) CBS 853.96 v1.0 release are below.
Genome Assembly
Genome Assembly size (Mbp) 32.62
Sequencing read coverage depth 90.7x
# of contigs 419
# of scaffolds 364
# of scaffolds >= 2Kbp 314
Scaffold N50 30
Scaffold L50 (Mbp) 0.34
# of gaps 55
% of scaffold length in gaps 0.1%
Three largest Scaffolds (Mbp) 1.39, 1.24, 1.04


ESTs Data set # sequences total # mapped to genome % mapped to genome
EstClusters ESTclusters 31754 30477 96.0%
Ests est.fasta 58377092 50243481 86.1%


Gene Models FilteredModels1
length (bp) of: average median
gene 1889 1639
transcript 1713 1480
exon 528 313
intron 81 60
description:
protein length (aa) 488 411
exons per gene 3.24 3
# of gene models 11247


Funding

The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.