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Info • Aspergillus rambellii 100887 v1.0

Status

[October 2017] The Aspergillus rambellii CBS 100887 genome was sequenced with Illumina, assembled with AllPathsLG, and annotated with the JGI Annotation pipeline. Mitochondrial genome was assembled separately and is available in the downloads section.

Summary statistics for the Aspergillus rambellii 100887 v1.0 release are below.
Genome Assembly
Genome Assembly size (Mbp) 27.03
Sequencing read coverage depth 105.5x
# of contigs 1068
# of scaffolds 1021
# of scaffolds >= 2Kbp 656
Scaffold N50 71
Scaffold L50 (Mbp) 0.12
# of gaps 47
% of scaffold length in gaps 0.1%
Three largest Scaffolds (Mbp) 0.54, 0.46, 0.34


ESTs Data set # sequences total # mapped to genome % mapped to genome
EstClusters ESTclusters 28198 27586 97.8%
Ests est.fasta 72562734 37282372 51.4%


Gene Models FilteredModels1
length (bp) of: average median
gene 1899 1644
transcript 1710 1478
exon 539 320
intron 89 67
description:
protein length (aa) 468 383
exons per gene 3.17 3
# of gene models 9133


Funding

The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.