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Info • Aspergillus rhizopodus v1.0

Status

[October 2016] The Aspergillus rhizopodus CBS 450.75 genome was sequenced with Illumina, assembled with AllPathsLG, and annotated with the JGI Annotation pipeline.

Summary statistics for the Aspergillus rhizopodus v1.0 release are below.
Genome Assembly
Genome Assembly size (Mbp) 27.58
Sequencing read coverage depth 98.6x
# of contigs 314
# of scaffolds 297
# of scaffolds >= 2Kbp 155
Scaffold N50 26
Scaffold L50 (Mbp) 0.35
# of gaps 17
% of scaffold length in gaps 0.0%
Three largest Scaffolds (Mbp) 0.95, 0.95, 0.68


ESTs Data set # sequences total # mapped to genome % mapped to genome
EstClusters ESTclusters 26038 25576 98.2%
Ests est.fasta 40203488 37786865 94.0%


Gene Models FilteredModels1
length (bp) of: average median
gene 1934 1669
transcript 1752 1505
exon 546 329
intron 84 66
description:
protein length (aa) 485 403
exons per gene 3.21 3
# of gene models 9816


Funding

The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.