Status
[October 2016] The Aspergillus rhizopodus CBS 450.75 genome was sequenced with Illumina, assembled with AllPathsLG, and annotated with the JGI Annotation pipeline.
Summary statistics for the Aspergillus rhizopodus v1.0
release are below.
| Genome Assembly | |
| Genome Assembly size (Mbp) | 27.58 |
| Sequencing read coverage depth | 98.6x |
| # of contigs | 314 |
| # of scaffolds | 297 |
| # of scaffolds >= 2Kbp | 155 |
| Scaffold N50 | 26 |
| Scaffold L50 (Mbp) | 0.35 |
| # of gaps | 17 |
| % of scaffold length in gaps | 0.0% |
| Three largest Scaffolds (Mbp) | 0.95, 0.95, 0.68 |
| ESTs | Data set | # sequences total | # mapped to genome | % mapped to genome |
| EstClusters | ESTclusters | 26038 | 25576 | 98.2% |
| Ests | est.fasta | 40203488 | 37786865 | 94.0% |
| Gene Models | FilteredModels1 | |
| length (bp) of: | average | median |
| gene | 1934 | 1669 |
| transcript | 1752 | 1505 |
| exon | 546 | 329 |
| intron | 84 | 66 |
| description: | ||
| protein length (aa) | 485 | 403 |
| exons per gene | 3.21 | 3 |
| # of gene models | 9816 |
Collaborators
Links
Funding
The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.
