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Info • Aspergillus sclerotiicarbonarius CBS 121057 v1.0

Status

Assembly v1 (Jul 2014) is a minimal draft assembly of Illumina gDNA reads using AllPathsLG and Velvet.

Summary statistics for the Aspergillus sclerotiicarbonarius CBS 121057 v1.0 release are below.
Genome Assembly
Genome Assembly size (Mbp) 37.62
Sequencing read coverage depth 91.6x
# of contigs 224
# of scaffolds 166
# of scaffolds >= 2Kbp 165
Scaffold N50 33
Scaffold L50 (Mbp) 0.36
# of gaps 58
% of scaffold length in gaps 0.1%
Three largest Scaffolds (Mbp) 1.56, 1.25, 1.01


ESTs Data set # sequences total # mapped to genome % mapped to genome
Other JGI_RNA_contigs 23073 22932 99.4%


Gene Models FilteredModels1
length (bp) of: average median
gene 1806 1534
transcript 1619 1382
exon 509 307
intron 88 60
description:
protein length (aa) 471 392
exons per gene 3.18 3
# of gene models 12571


Genome Reference(s)

Funding

The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.