Info • Aspergillus sergii CBS 130017 v1.0

Status

[October 2016] The Aspergillus sergii CBS 130017 genome was sequenced with Illumina, assembled with AllPathsLG, and annotated with the JGI Annotation pipeline. Mitochondrial genome was assembled separately and is available in the downloads section.

Summary statistics for the Aspergillus sergii v1.0 release are below.
Genome Assembly
Genome Assembly size (Mbp) 38.33
Sequencing read coverage depth 67.1x
# of contigs 276
# of scaffolds 262
# of scaffolds >= 2Kbp 217
Scaffold N50 33
Scaffold L50 (Mbp) 0.38
# of gaps 14
% of scaffold length in gaps 0.0%
Three largest Scaffolds (Mbp) 1.32, 0.92, 0.92


ESTs Data set # sequences total # mapped to genome % mapped to genome
EstClusters ESTclusters 28524 27469 96.3%
Ests est.fasta 53251688 52890523 99.3%


Gene Models FilteredModels1
length (bp) of: average median
gene 1829 1582
transcript 1639 1420
exon 510 304
intron 88 62
description:
protein length (aa) 466 394
exons per gene 3.21 3
# of gene models 13713


Funding

The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.