Info • Aspergillus shendaweii IBT 34197 v1.0

Status

[November 2019] The Aspergillus shendaweii IBT 34197 v1.0 genome was sequenced with Illumina, assembled with SPAdes, and annotated with the JGI Annotation Pipeline. Mitochondrial genome was assembled separately and is available in the downloads section.

Summary statistics for the Aspergillus shendaweii IBT 34197 v1.0 release are below.
Genome Assembly
Genome Assembly size (Mbp) 29.20
Sequencing read coverage depth 142.52x
# of contigs 314
# of scaffolds 299
# of scaffolds >= 2Kbp 265
Scaffold N50 35
Scaffold L50 (Mbp) 0.26
# of gaps 15
% of scaffold length in gaps 0.0%
Three largest Scaffolds (Mbp) 1.26, 0.73, 0.66


ESTs Data set # sequences total # mapped to genome % mapped to genome
EstClusters ESTclusters 30753 26706 86.8%
Ests est.fasta 32672291 32017669 98.0%


Gene Models FilteredModels1
length (bp) of: average median
gene 1936 1670
transcript 1754 1515
exon 532 318
intron 81 61
description:
protein length (aa) 479 397
exons per gene 3.30 3
# of gene models 9995


Funding

The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.